Index _ | A | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U | V | W _ __init__() (pyscal.core.System method) (pyscal.crystal_structures.ElementCreator method) (pyscal.crystal_structures.Structure method) (pyscal.trajectory.Timeslice method) (pyscal.trajectory.Trajectory method) A add_atoms() (pyscal.core.System method) apply_mask() (pyscal.core.System method) apply_selection() (pyscal.core.System method) atoms (pyscal.core.System property) average_over_neighbors() (pyscal.core.System method) B box (pyscal.core.System property) box_dimensions (pyscal.core.System property) C calculate_angularcriteria() (pyscal.core.System method) calculate_chiparams() (pyscal.core.System method) calculate_disorder() (pyscal.core.System method) calculate_q() (pyscal.core.System method) calculate_rdf() (pyscal.core.System method) cluster_atoms() (pyscal.core.System method) compare_atomic_env() (in module pyscal.misc) composition (pyscal.core.System property) concentration (pyscal.core.System property) D delete() (pyscal.core.System method) direct_coordinates (pyscal.core.System property) E element (pyscal.crystal_structures.Structure attribute) ElementCreator (class in pyscal.crystal_structures) embed_in_cubic_box() (pyscal.core.System method) F find_largest_cluster() (pyscal.core.System method) find_neighbors() (pyscal.core.System method) find_solids() (pyscal.core.System method) find_tetrahedral_voids() (in module pyscal.misc) from_structure() (pyscal.core.System class method) G general_lattice() (in module pyscal.crystal_structures) get_block() (pyscal.trajectory.Trajectory method) get_concentration() (pyscal.core.System method) get_distance() (pyscal.core.System method) I iter_atoms() (pyscal.core.System method) L lattice (pyscal.crystal_structures.Structure attribute) LatticeCreator (class in pyscal.crystal_structures) load() (pyscal.trajectory.Trajectory method) M module pyscal.core pyscal.crystal_structures pyscal.misc pyscal.traj_process pyscal.trajectory N natoms (pyscal.core.System property) P pyscal.core module pyscal.crystal_structures module pyscal.misc module pyscal.traj_process module pyscal.trajectory module R read_file() (in module pyscal.traj_process) read_inputfile() (pyscal.core.System method) remap_atoms_into_box() (pyscal.core.System method) remove_mask() (pyscal.core.System method) remove_selection() (pyscal.core.System method) repeat() (pyscal.core.System method) reset_neighbors() (pyscal.core.System method) S split_trajectory() (in module pyscal.traj_process) Structure (class in pyscal.crystal_structures) structure_creator() (in module pyscal.crystal_structures) structure_dict() (pyscal.crystal_structures.Structure method) System (class in pyscal.core) T Timeslice (class in pyscal.trajectory) to_ase() (pyscal.core.System method) (pyscal.trajectory.Timeslice method) to_dict() (pyscal.trajectory.Timeslice method) to_file() (pyscal.core.System method) (pyscal.trajectory.Timeslice method) to_system() (pyscal.trajectory.Timeslice method) Trajectory (class in pyscal.trajectory) U unload() (pyscal.trajectory.Trajectory method) V volume (pyscal.core.System property) W write_file() (in module pyscal.traj_process)