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Index
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Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
V
|
W
A
allaq (pyscal.catom.Atom attribute)
allq (pyscal.catom.Atom attribute)
angular (pyscal.catom.Atom attribute)
Atom (class in pyscal.catom)
atoms (pyscal.core.System attribute)
avg_angular (pyscal.catom.Atom attribute)
avg_disorder (pyscal.catom.Atom attribute)
avg_sij (pyscal.catom.Atom attribute)
avg_volume (pyscal.catom.Atom attribute)
B
bond_chain_count (pyscal.catom.Atom attribute)
bonds (pyscal.catom.Atom attribute)
box (pyscal.core.System attribute)
C
calculate_adaptive_cna() (pyscal.catom.Atom method)
calculate_angularcriteria() (pyscal.core.System method)
calculate_centrosymmetry() (pyscal.core.System method)
calculate_chiparams() (pyscal.core.System method)
calculate_cna() (pyscal.core.System method)
calculate_disorder() (pyscal.core.System method)
calculate_q() (pyscal.core.System method)
calculate_rdf() (pyscal.core.System method)
calculate_solidneighbors() (pyscal.core.System method)
calculate_sro() (pyscal.core.System method)
calculate_vorovector() (pyscal.core.System method)
centrosymmetry (pyscal.catom.Atom attribute)
chiparams (pyscal.catom.Atom attribute)
cluster (pyscal.catom.Atom attribute)
cluster_atoms() (pyscal.core.System method)
common_neighbor_bond_count (pyscal.catom.Atom attribute)
common_neighbor_bonds (pyscal.catom.Atom attribute)
common_neighbor_count (pyscal.catom.Atom attribute)
common_neighbors (pyscal.catom.Atom attribute)
compare_atomic_env() (in module pyscal.misc)
condition (pyscal.catom.Atom attribute)
coordination (pyscal.catom.Atom attribute)
custom (pyscal.catom.Atom attribute)
cutoff (pyscal.catom.Atom attribute)
D
disorder (pyscal.catom.Atom attribute)
E
edge_lengths (pyscal.catom.Atom attribute)
F
face_perimeters (pyscal.catom.Atom attribute)
face_vertices (pyscal.catom.Atom attribute)
find_clusters() (pyscal.core.System method)
find_largestcluster() (pyscal.core.System method)
find_neighbors() (pyscal.core.System method)
find_solids() (pyscal.core.System method)
G
get_atom() (pyscal.core.System method)
get_custom() (pyscal.core.System method)
get_distance() (pyscal.core.System method)
get_q() (pyscal.catom.Atom method)
get_qlm() (pyscal.catom.Atom method)
get_qvals() (pyscal.core.System method)
greedy_edge_selection() (pyscal.core.System method)
greedy_vertex_matching() (pyscal.core.System method)
I
id (pyscal.catom.Atom attribute)
L
largest_cluster (pyscal.catom.Atom attribute)
lcutlarge (pyscal.catom.Atom attribute)
lcutsmall (pyscal.catom.Atom attribute)
loc (pyscal.catom.Atom attribute)
local_angles (pyscal.catom.Atom attribute)
M
make_crystal() (in module pyscal.crystal_structures)
mask (pyscal.catom.Atom attribute)
N
neighbor_distance (pyscal.catom.Atom attribute)
neighbor_vector (pyscal.catom.Atom attribute)
neighbor_weights (pyscal.catom.Atom attribute)
neighbors (pyscal.catom.Atom attribute)
next_neighbor_distances (pyscal.catom.Atom attribute)
next_neighbors (pyscal.catom.Atom attribute)
P
pos (pyscal.catom.Atom attribute)
pyscal.catom (module)
pyscal.core (module)
pyscal.crystal_structures (module)
pyscal.misc (module)
pyscal.traj_process (module)
R
read_ase() (in module pyscal.traj_process)
read_inputfile() (pyscal.core.System method)
read_lammps_dump() (in module pyscal.traj_process)
read_mdtraj() (in module pyscal.traj_process)
read_poscar() (in module pyscal.traj_process)
reset_neighbors() (pyscal.core.System method)
S
set_atom() (pyscal.core.System method)
set_q() (pyscal.catom.Atom method)
sij (pyscal.catom.Atom attribute)
solid (pyscal.catom.Atom attribute)
split_traj_lammps_dump() (in module pyscal.traj_process)
split_trajectory() (in module pyscal.traj_process)
sro (pyscal.catom.Atom attribute)
structure (pyscal.catom.Atom attribute)
surface (pyscal.catom.Atom attribute)
System (class in pyscal.core)
T
test() (in module pyscal.core)
to_file() (pyscal.core.System method)
type (pyscal.catom.Atom attribute)
V
vertex_numbers (pyscal.catom.Atom attribute)
vertex_vectors (pyscal.catom.Atom attribute)
volume (pyscal.catom.Atom attribute)
vorovector (pyscal.catom.Atom attribute)
W
write_poscar() (in module pyscal.traj_process)
write_structure() (in module pyscal.traj_process)
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