Index A | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U | V | W A add_atoms() (pyscal.core.System method) allaq() (pyscal.catom.Atom property) allq() (pyscal.catom.Atom property) angular() (pyscal.catom.Atom property) Atom (class in pyscal.catom) atoms (pyscal.core.System attribute) atoms() (pyscal.core.System property) avg_angular() (pyscal.catom.Atom property) avg_disorder() (pyscal.catom.Atom property) avg_energy() (pyscal.catom.Atom property) avg_entropy() (pyscal.catom.Atom property) avg_sij() (pyscal.catom.Atom property) avg_volume() (pyscal.catom.Atom property) B bonds() (pyscal.catom.Atom property) box (pyscal.core.System attribute) box() (pyscal.core.System property) C calculate_angularcriteria() (pyscal.core.System method) calculate_centrosymmetry() (pyscal.core.System method) calculate_chiparams() (pyscal.core.System method) calculate_cna() (pyscal.core.System method) calculate_disorder() (pyscal.core.System method) calculate_energy() (pyscal.core.System method) calculate_entropy() (pyscal.core.System method) calculate_q() (pyscal.core.System method) calculate_rdf() (pyscal.core.System method) calculate_solidneighbors() (pyscal.core.System method) calculate_sro() (pyscal.core.System method) calculate_vorovector() (pyscal.core.System method) centrosymmetry() (pyscal.catom.Atom property) chiparams() (pyscal.catom.Atom property) cluster() (pyscal.catom.Atom property) cluster_atoms() (pyscal.core.System method) cna() (pyscal.catom.Atom property) common() (pyscal.catom.Atom property) compare_atomic_env() (in module pyscal.misc) condition() (pyscal.catom.Atom property) coordination() (pyscal.catom.Atom property) custom() (pyscal.catom.Atom property) cutoff() (pyscal.catom.Atom property) D disorder() (pyscal.catom.Atom property) E edge_lengths() (pyscal.catom.Atom property) embed_in_cubic_box() (pyscal.core.System method) energy() (pyscal.catom.Atom property) entropy() (pyscal.catom.Atom property) extract_cubic_box() (pyscal.core.System method) F face_perimeters() (pyscal.catom.Atom property) face_vertices() (pyscal.catom.Atom property) find_diamond_neighbors() (pyscal.core.System method) find_largestcluster() (pyscal.core.System method) find_neighbors() (pyscal.core.System method) find_solids() (pyscal.core.System method) find_tetrahedral_voids() (in module pyscal.misc) G get_atom() (pyscal.core.System method) get_block() (pyscal.trajectory.Trajectory method) get_concentration() (pyscal.core.System method) get_custom() (pyscal.core.System method) get_distance() (pyscal.core.System method) get_q() (pyscal.catom.Atom method) get_qlm() (pyscal.catom.Atom method) get_qvals() (pyscal.core.System method) ghost() (pyscal.catom.Atom property) I id() (pyscal.catom.Atom property) identify_diamond() (pyscal.core.System method) iter_atoms() (pyscal.core.System method) L largest_cluster() (pyscal.catom.Atom property) load() (pyscal.trajectory.Trajectory method) loc() (pyscal.catom.Atom property) local_angles() (pyscal.catom.Atom property) M make_crystal() (in module pyscal.crystal_structures) mask() (pyscal.catom.Atom property) module pyscal.catom pyscal.core pyscal.crystal_structures pyscal.misc pyscal.traj_process pyscal.trajectory N neighbor_distance() (pyscal.catom.Atom property) neighbor_vector() (pyscal.catom.Atom property) neighbor_weights() (pyscal.catom.Atom property) neighbors() (pyscal.catom.Atom property) next_neighbor_distances() (pyscal.catom.Atom property) next_neighbors() (pyscal.catom.Atom property) P pos() (pyscal.catom.Atom property) pyscal.catom module pyscal.core module pyscal.crystal_structures module pyscal.misc module pyscal.traj_process module pyscal.trajectory module R read_file() (in module pyscal.traj_process) read_inputfile() (pyscal.core.System method) remap_atoms() (pyscal.core.System method) repeat() (pyscal.core.System method) reset_neighbors() (pyscal.core.System method) S set_atom() (pyscal.core.System method) set_atom_cutoff() (pyscal.core.System method) set_q() (pyscal.catom.Atom method) show() (pyscal.core.System method) sij() (pyscal.catom.Atom property) solid() (pyscal.catom.Atom property) split_trajectory() (in module pyscal.traj_process) sro() (pyscal.catom.Atom property) structure() (pyscal.catom.Atom property) surface() (pyscal.catom.Atom property) System (class in pyscal.core) T test() (in module pyscal.core) Timeslice (class in pyscal.trajectory) to_ase() (pyscal.core.System method) (pyscal.trajectory.Timeslice method) to_dict() (pyscal.trajectory.Timeslice method) to_file() (pyscal.core.System method) (pyscal.trajectory.Timeslice method) to_system() (pyscal.trajectory.Timeslice method) Trajectory (class in pyscal.trajectory) type() (pyscal.catom.Atom property) U unload() (pyscal.trajectory.Trajectory method) V vertex_numbers() (pyscal.catom.Atom property) vertex_positions() (pyscal.catom.Atom property) vertex_vectors() (pyscal.catom.Atom property) volume() (pyscal.catom.Atom property) vorovector() (pyscal.catom.Atom property) W write_file() (in module pyscal.traj_process)